Computational Performance

The following examples demonstrate the performance of Promethium’s density functional theory (DFT) implementation for a range of system sizes. The calculations below were run through the Promethium platform and use a single NVIDIA A100 GPU with 80 GB of memory. These calculations use the state-of-the-art in density functional development – the ωB97M-V functional. This is a range-separated hybrid meta-GGA functional with a nonlocal dispersion treatment. Timings that use of this functional demonstrate the scalability and performance of all the underlying components required to evaluate the functional. Further, the basis sets used in these calculations include angular momentum through g-orbitals indicating both the ability to use large, accurate basis sets without loss of efficiency.

System description:​
C-terminal zinc finger of the Human RING finger protein 141 (RFP141). ​
Timing:
5.6 hours ​
Calculation details:
Calculation result:
Energy and gradient​
Level of theory:
ωB97M-V/def2-TZVPP​
Implicit solvent:
PCM with ε=78.4​
Number of atoms:
652 atoms​
Number of basis functions:
15022 basis functions​
PDB ID:
5XEK
System description:​
Solution structure of the human metallochaperone HAH1 loaded with Cu(I).​
Timing:
11.9 hours ​
Calculation details:
Calculation result:
Energy and gradient​
Level of theory:
ωB97M-V/def2-TZVP​
Implicit solvent:
PCM with ε=78.4​
Number of atoms:
1044 atoms​
Number of basis functions:
19189 basis functions​
PDB ID:
1TL4​
System description:​
S100B calcium binding protein loaded with Ca2+.​
Timing:
7.0 hours ​
Calculation details:
Calculation result:
Energy and gradient​
Level of theory:
ωB97M-V/def2-SVP​
Implicit solvent:
PCM with ε=78.4​
Number of atoms:
1514 atoms​
Number of basis functions:
14608 basis functions​
PDB ID:
4PE7​
System description:​
Zinc binding domain of a polyhistidine triad (Pht) protein from streptococcus pneumoniae.​
Timing:
19.6 hours
Calculation details:
Calculation result:
Energy and gradient​
Level of theory:
ωB97M-V/def2-SVP​
Implicit solvent:
PCM with ε=78.4​
Number of atoms:
2056 atoms​
Number of basis functions:
19436 basis functions​
PDB ID:
3ZFJ
System description:​
The B subunit of the ammonia monooxygenase enzyme from the ammonia-oxidizing archaea Nitrosocaldus yellowstonii.​
Timing:
19.3 hours ​
Calculation details:
Calculation result:
Energy and gradient​
Level of theory:
ωB97M-V/def2-SV(P)​
Implicit solvent:
PCM with ε=78.4​
Number of atoms:
2367 atoms​
Number of basis functions:
19052 basis functions​
PDB ID:
4O65
System description:​
A human ionotropic glutamate receptor (iGluR) protein with a quinazolinedione sulfonamide bound. ​
Timing:
27.6 hours ​
Calculation details:
Calculation result:
Energy only​
Level of theory:
HF-3c/MINIX​
Implicit solvent:
PCM with ε=78.4​
Number of atoms:
8223 atoms​
Number of basis functions:
24820 basis functions​
PDB ID:
3R7X

Our Roadmap

Heading Here One Line

2023
Q1
Event 3
Event 2
Event 1
Q2
Event 4
Q3
Event 5
Q4
Event 6
2024
Q1
Event 14
Event 11
Event 7
Q2
Event 13
Event 8
Q3
Event 12
Event 9
Q4
Event 10

Sign up today to get
20 free hours of Promethium compute time!